rliger (version 1.0.0)

plotClusterProportions: Plot cluster proportions by dataset

Description

Generates plot of clusters sized by the proportion of total cells

Usage

plotClusterProportions(object, return.plot = FALSE)

Arguments

object

liger object. Should call quantileAlignSNF before calling.

return.plot

Return ggplot object (default FALSE)

Value

print plot to console (return.plot = FALSE); ggplot object (return.plot = TRUE) list of ggplot objects.

Examples

# NOT RUN {
# ligerex (liger object), factorization complete input
ligerex <- quantile_norm(ligerex)
# plot cluster proportions
plotClusterProportions(ligerex)
# }