.ggCellViolin: Produce single violin plot with data frame passed from upstream

Description

Produce single violin plot with data frame passed from upstream

Usage

.ggCellViolin(
  plotDF,
  y,
  groupBy = NULL,
  colorBy = NULL,
  violin = TRUE,
  violinAlpha = 0.8,
  violinWidth = 0.9,
  box = FALSE,
  boxAlpha = 0.6,
  boxWidth = 0.4,
  dot = FALSE,
  dotColor = "black",
  dotSize = getOption("ligerDotSize"),
  raster = NULL,
  seed = 1,
  ...
)

Value

ggplot object by default. When plotly = TRUE, returns plotly (htmlwidget) object.

Arguments

plotDF: Data frame like object (fortifiable) that contains all necessary information to make the plot.
y, groupBy, colorBy: See plotCellViolin.
violin, box, dot: Logical, whether to add violin plot, box plot or dot (scatter) plot, respectively. Layers are added in the order of dot, violin, and violin on the top surface. By default, only violin plot is generated.
violinAlpha, boxAlpha: Numeric, controls the transparency of layers. Default 0.8, 0.6, respectively.
violinWidth, boxWidth: Numeric, controls the width of violin/box bounding box. Default 0.9 and 0.4.
dotColor, dotSize: Numeric, globally controls the appearance of all dots. Default "black" and getOption("ligerDotSize") (1).
raster: Logical, whether to rasterize the dot plot. Default NULL automatically rasterizes the dot plot when number of total cells to be plotted exceeds 100,000.
seed: Random seed for reproducibility. Default 1.
...: More theme setting arguments passed to .ggplotLigerTheme.