rliger (version 2.0.1)

convertOldLiger: Convert old liger object to latest version

Description

Convert old liger object to latest version

Usage

convertOldLiger(
  object,
  dimredName,
  clusterName = "clusters",
  h5FilePath = NULL
)

Arguments

object

liger object from rliger version <1.99.0

dimredName

The name of variable in cellMeta slot to store the dimensionality reduction matrix, which originally located in tsne.coords slot. Default "tsne.coords".

clusterName

The name of variable in cellMeta slot to store the clustering assignment, which originally located in clusters slot. Default "clusters".

h5FilePath

Named list, to specify the path to the H5 file of each dataset if location has been changed. Default NULL looks at the file paths stored in object.

Examples

if (FALSE) {
# Suppose you have a liger object of old version (<1.99.0)
newLig <- convertOldLiger(oldLig)
}