isH5Liger

Check if a liger or ligerDataset object is made of HDF5 file

Uses an extension of nonnegative matrix factorization to identify shared and dataset-specific factors. See Welch J, Kozareva V, et al (2019) <doi:10.1016/j.cell.2019.05.006>, and Liu J, Gao C, Sodicoff J, et al (2020) <doi:10.1038/s41596-020-0391-8> for more details.

Yichen Wang

rliger

Linked Inference of Genomic Experimental Relationships

Joshua Welch

Chao Gao

Jialin Liu

Joshua Sodicoff

Velina Kozareva

Evan Macosko

Paul Hoffman

Ilya Korsunsky

Robert Lee

Andrew Robbins

isH5Liger function

<dl><dt>object</dt>
<dd>A liger or ligerDataset object.</dd>
<dt>dataset</dt>
<dd>If <code>object</code> is of liger class, check a specific dataset.
If <code>NULL</code>, Check if all datasets are made of HDF5 file. Default
<code>NULL</code>.</dd></dl>

Arguments

Check if a liger or ligerDataset object is made of HDF5 file — isH5Liger

<dl>

<dt>object</dt>
<dd>A liger or ligerDataset object.</dd>


<dt>dataset</dt>
<dd>If <code>object</code> is of liger class, check a specific dataset.
If <code>NULL</code>, Check if all datasets are made of HDF5 file. Default
<code>NULL</code>.</dd>

</dl>

Check if a liger or ligerDataset object is made of HDF5 file

isH5Liger: Check if a liger or ligerDataset object is made of HDF5 file

Description

Usage

Value

Arguments

Examples