ligerATACDataset-class

ligerATACDataset

Inherits from ligerDataset class. Contained slots
can be referred with the link.

Uses an extension of nonnegative matrix factorization to identify shared and dataset-specific factors. See Welch J, Kozareva V, et al (2019) <doi:10.1016/j.cell.2019.05.006>, and Liu J, Gao C, Sodicoff J, et al (2020) <doi:10.1038/s41596-020-0391-8> for more details.

Yichen Wang

rliger

Linked Inference of Genomic Experimental Relationships

Joshua Welch

Chao Gao

Jialin Liu

Joshua Sodicoff

Velina Kozareva

Evan Macosko

Paul Hoffman

Ilya Korsunsky

Robert Lee

Andrew Robbins

ligerATACDataset-class function

<dl>
<dt><code>rawPeak</code></dt>
<dd>sparse matrix</dd></dl>
<dt><code>normPeak</code></dt>
<dd>sparse matrix</dd>

Slots

Subclass of ligerDataset for ATAC modality — ligerATACDataset-class

<dl>
<dt><code>rawPeak</code></dt>
<dd>sparse matrix</dd>


<dt><code>normPeak</code></dt>
<dd>sparse matrix</dd>


</dl>

Subclass of ligerDataset for ATAC modality

ligerATACDataset-class: Subclass of ligerDataset for ATAC modality

Description

Arguments

Slots