rliger (version 2.0.1)

rawPeak: Access ligerATACDataset peak data

Description

Similar as how default ligerDataset data is accessed.

Usage

rawPeak(x, dataset)
rawPeak(x, dataset, check = TRUE) <- value
normPeak(x, dataset)
normPeak(x, dataset, check = TRUE) <- value
# S4 method for liger,character
rawPeak(x, dataset)
# S4 method for liger,character
rawPeak(x, dataset, check = TRUE) <- value
# S4 method for liger,character
normPeak(x, dataset)
# S4 method for liger,character
normPeak(x, dataset, check = TRUE) <- value
# S4 method for ligerATACDataset,missing
rawPeak(x, dataset = NULL)
# S4 method for ligerATACDataset,missing
rawPeak(x, dataset = NULL, check = TRUE) <- value
# S4 method for ligerATACDataset,missing
normPeak(x, dataset = NULL)
# S4 method for ligerATACDataset,missing
normPeak(x, dataset = NULL, check = TRUE) <- value

Value

The retrieved peak count matrix or the updated x object.

Arguments

x

ligerATACDataset object or a liger object.

dataset

Name or numeric index of an ATAC dataset.

check

Logical, whether to perform object validity check on setting new value.

value

dgCMatrix-class matrix.