sub-liger

[.liger

Uses an extension of nonnegative matrix factorization to identify shared and dataset-specific factors. See Welch J, Kozareva V, et al (2019) <doi:10.1016/j.cell.2019.05.006>, and Liu J, Gao C, Sodicoff J, et al (2020) <doi:10.1038/s41596-020-0391-8> for more details.

Yichen Wang

rliger

Linked Inference of Genomic Experimental Relationships

Joshua Welch

Chao Gao

Jialin Liu

Joshua Sodicoff

Velina Kozareva

Evan Macosko

Paul Hoffman

Ilya Korsunsky

Robert Lee

Andrew Robbins

sub-liger function

<dl><dt>x</dt>
<dd>A liger object</dd>
<dt>i</dt>
<dd>Feature subscriptor, passed to <code>featureIdx</code> of
<code>subsetLiger</code>.</dd>
<dt>j</dt>
<dd>Cell subscriptor, passed to <code>cellIdx</code> of
<code>subsetLiger</code>.</dd>
<dt>...</dt>
<dd>Additional arguments passed to <code>subsetLiger</code>.</dd></dl>

Arguments

Subset liger with brackets — sub-liger

<dl>

<dt>x</dt>
<dd>A liger object</dd>


<dt>i</dt>
<dd>Feature subscriptor, passed to <code>featureIdx</code> of
<code>subsetLiger</code>.</dd>


<dt>j</dt>
<dd>Cell subscriptor, passed to <code>cellIdx</code> of
<code>subsetLiger</code>.</dd>


<dt>...</dt>
<dd>Additional arguments passed to <code>subsetLiger</code>.</dd>

</dl>

Subset liger with brackets

sub-liger: Subset liger with brackets

Description

Usage

Value

Arguments

See Also

Examples