sub-ligerDataset

[.ligerDataset

Uses an extension of nonnegative matrix factorization to identify shared and dataset-specific factors. See Welch J, Kozareva V, et al (2019) <doi:10.1016/j.cell.2019.05.006>, and Liu J, Gao C, Sodicoff J, et al (2020) <doi:10.1038/s41596-020-0391-8> for more details.

Yichen Wang

rliger

Linked Inference of Genomic Experimental Relationships

Joshua Welch

Chao Gao

Jialin Liu

Joshua Sodicoff

Velina Kozareva

Evan Macosko

Paul Hoffman

Ilya Korsunsky

Robert Lee

Andrew Robbins

sub-ligerDataset function

<dl><dt>x</dt>
<dd>A ligerDataset object</dd>
<dt>i</dt>
<dd>Numeric, logical index or character vector of feature names to
subscribe. Leave missing for all features.</dd>
<dt>j</dt>
<dd>Numeric, logical index or character vector of cell IDs to subscribe.
Leave missing for all cells.</dd>
<dt>...</dt>
<dd>Additional arguments passed to <code>subsetLigerDataset</code>.</dd></dl>

Arguments

Subset ligerDataset object — sub-ligerDataset

<dl>

<dt>x</dt>
<dd>A ligerDataset object</dd>


<dt>i</dt>
<dd>Numeric, logical index or character vector of feature names to
subscribe. Leave missing for all features.</dd>


<dt>j</dt>
<dd>Numeric, logical index or character vector of cell IDs to subscribe.
Leave missing for all cells.</dd>


<dt>...</dt>
<dd>Additional arguments passed to <code>subsetLigerDataset</code>.</dd>

</dl>

Subset ligerDataset object

sub-ligerDataset: Subset ligerDataset object

Description

Usage

Value

Arguments

Examples