fitted.seqModel: Extract fitted values from a sequence of regression models

Description

Extract fitted values from a sequence of regression models, such as submodels along a robust or groupwise least angle regression sequence, or sparse least trimmed squares regression models for a grid of values for the penalty parameter.

Usage

# S3 method for seqModel
fitted(object, s = NA, drop = !is.null(s), ...)
# S3 method for tslars
fitted(object, p, ...)
# S3 method for perrySeqModel
fitted(object, ...)
# S3 method for sparseLTS
fitted(
  object,
  s = NA,
  fit = c("reweighted", "raw", "both"),
  drop = !is.null(s),
  ...
)

Value

A numeric vector or matrix containing the requested fitted values.

Arguments

object: the model fit from which to extract fitted values.
s: for the "seqModel" method, an integer vector giving the steps of the submodels for which to extract the fitted values (the default is to use the optimal submodel). For the "sparseLTS" method, an integer vector giving the indices of the models for which to extract fitted values. If fit is "both", this can be a list with two components, with the first component giving the indices of the reweighted fits and the second the indices of the raw fits. The default is to use the optimal model for each of the requested estimators. Note that the optimal models may not correspond to the same value of the penalty parameter for the reweighted and the raw estimator.
drop: a logical indicating whether to reduce the dimension to a vector in case of only one step.
...: for the "tslars" method, additional arguments to be passed down to the "seqModel" method. For the other methods, additional arguments are currently ignored.
p: an integer giving the lag length for which to extract fitted values (the default is to use the optimal lag length).
fit: a character string specifying which fitted values to extract. Possible values are "reweighted" (the default) for the fitted values from the reweighted estimator, "raw" for the fitted values from the raw estimator, or "both" for the fitted values from both estimators.

Author

Andreas Alfons

Examples

Run this code

## generate data
# example is not high-dimensional to keep computation time low
library("mvtnorm")
set.seed(1234)  # for reproducibility
n <- 100  # number of observations
p <- 25   # number of variables
beta <- rep.int(c(1, 0), c(5, p-5))  # coefficients
sigma <- 0.5      # controls signal-to-noise ratio
epsilon <- 0.1    # contamination level
Sigma <- 0.5^t(sapply(1:p, function(i, j) abs(i-j), 1:p))
x <- rmvnorm(n, sigma=Sigma)    # predictor matrix
e <- rnorm(n)                   # error terms
i <- 1:ceiling(epsilon*n)       # observations to be contaminated
e[i] <- e[i] + 5                # vertical outliers
y <- c(x %*% beta + sigma * e)  # response
x[i,] <- x[i,] + 5              # bad leverage points


## robust LARS
# fit model
fitRlars <- rlars(x, y, sMax = 10)
# extract fitted values
fitted(fitRlars)
head(fitted(fitRlars, s = 1:5))


## sparse LTS over a grid of values for lambda
# fit model
frac <- seq(0.2, 0.05, by = -0.05)
fitSparseLTS <- sparseLTS(x, y, lambda = frac, mode = "fraction")
# extract fitted values
fitted(fitSparseLTS)
head(fitted(fitSparseLTS, fit = "both"))
head(fitted(fitSparseLTS, s = NULL))
head(fitted(fitSparseLTS, fit = "both", s = NULL))