initStepper

Initializes <code>rodeo</code>'s built-in ODE solver. This method must be called
prior to using <code><a href="/link/step?package=rodeo&version=0.8.2" data-mini-rdoc="rodeo::step">step</a></code>.

Provides an R6 class and several utility methods to
facilitate the implementation of models based on ordinary
differential equations. The heart of the package is a code generator
that creates compiled 'Fortran' (or 'R') code which can be passed to
a numerical solver. There is direct support for solvers contained
in packages 'deSolve' and 'rootSolve'.

David Kneis

rodeo

A Code Generator for ODE-Based Models

initStepper function

<dl><dt>sources</dt>
<dd>Name(s) of fortran source file(s) where a module with the
fixed name 'functions' is implemented. This module must contain all
user-defined functions referenced in process rates or
stoichiometric factors. Can be <code>NULL</code>, the name of a single file, or
a vector of file names if the Fortran code is split over several files.</dd>
<dt>method</dt>
<dd>Name of a the solver. Currently, 'rk5' is the only supported
value (Runge-Kutta method of Cash and Karp).</dd></dl>

Arguments

<a href="/link/david.kneis%40tu-dresden.de?package=rodeo&version=0.8.2" data-mini-rdoc="rodeo::david.kneis@tu-dresden.de">david.kneis@tu-dresden.de</a>

Author

Initializes <code>rodeo</code>'s built-in ODE solver. This method must be called
prior to using <code><a href='https://rdrr.io/r/stats/step.html'>step</a></code>.

Initialize Internal ODE Solver — initStepper

<dl>

<dt>sources</dt>
<dd>Name(s) of fortran source file(s) where a module with the
fixed name 'functions' is implemented. This module must contain all
user-defined functions referenced in process rates or
stoichiometric factors. Can be <code>NULL</code>, the name of a single file, or
a vector of file names if the Fortran code is split over several files.</dd>


<dt>method</dt>
<dd>Name of a the solver. Currently, 'rk5' is the only supported
value (Runge-Kutta method of Cash and Karp).</dd>

</dl>

<a href='mailto:david.kneis@tu-dresden.de'>david.kneis@tu-dresden.de</a>

initStepper: Initialize Internal ODE Solver

Description

Value

Arguments

Author

See Also