This package provides methods to
import a conceptual ODE-based model stored in tabular form (i.e. as text files or spreadsheets).
generate source code (either R or Fortran) to be passed to an ODE-solver.
visualize and export basic information about a model, e.g. for documentation purposes.
See rodeo-class for the rodeo class
and the corresponding class methods.
Type help(package="rodeo") or see the links below to access the
documentation of non-class methods contained in the package.
buildFromWorkbook Builds and compiles a model
fully specified in a workbook (supports .xlsx and .ods format).
forcingFunctions Generation of forcing functions
in Fortran.
exportDF Export of data frames as TEX or HTML code.
stoiCreate Creates a stoichiometry matrix from a set
of chemical reactions.
stoiCheck Validates a stoichiometry matrix by checking
for conservation of mass.
Consult the package vignette for details. The concept of writing an ODE system in tabular/matrix form is nicely introduced, e. g., in the book of Reichert, P., Borchardt, D., Henze, M., Rauch, W., Shanahan, P., Somlyody, L., and Vanrolleghem, P. A. (2001): River water quality model No. 1, IWA publishing, ISBN 9781900222822.
The current source code repository is https://github.com/dkneis/rodeo.
Useful links: