stoi

Definition of the links between simulated processes and state variables
in the bacteria growth example model.

Provides an R6 class and several utility methods to
facilitate the implementation of models based on ordinary
differential equations. The heart of the package is a code generator
that creates compiled 'Fortran' (or 'R') code which can be passed to
a numerical solver. There is direct support for solvers contained
in packages 'deSolve' and 'rootSolve'.

David Kneis

rodeo

A Code Generator for ODE-Based Models

stoi function

A data frame with the following fields:<dl>
 <dt>variable : </dt>
<dd>Name of the state variable</dd> <dt>process : </dt>
<dd>Name of the process</dd> <dt>expression : </dt>
<dd>Mathematical expression (as a string)</dd> 
</dl>

Format

Specification of Stoichiometry — stoi

A data frame with the following fields:<dl>
 <dt>variable : </dt>
<dd>Name of the state variable</dd>

 <dt>process : </dt>
<dd>Name of the process</dd>

 <dt>expression : </dt>
<dd>Mathematical expression (as a string)</dd>

 
</dl>

stoi: Specification of Stoichiometry

Description

Arguments

Format