rMatrix provides a correlation matrix with confidence intervals and a p-value adjusted for multiple testing.
rMatrix(
dat,
x,
y = NULL,
conf.level = 0.95,
correction = "fdr",
digits = 2,
pValueDigits = 3,
colspace = 2,
rowspace = 0,
colNames = "numbers"
)# S3 method for rMatrix
print(
x,
digits = x$digits,
pValueDigits = x$pValueDigits,
colNames = x$colNames,
...
)
An rMatrix object that when printed shows the correlation matrix
An object with the input and several output variables. Most notably a number of matrices:
Pearson r values.
Degrees of freedom.
Lower bound of Pearson r confidence interval.
Upper bound of Pearson r confidence interval.
Original p-values.
p-values adjusted for multiple testing.
A dataframe containing the relevant variables.
Vector of 1+ variable names.
Vector of 1+ variable names; if this is left empty, a symmetric matrix is created; if this is filled, the matrix will have the x variables defining the rows and the y variables defining the columns.
The confidence of the confidence intervals.
Correction for multiple testing: an element out of the vector c("holm", "hochberg", "hommel", "bonferroni", "BH", "BY", "fdr", "none"). NOTE: the p-values are corrected for multiple testing; The confidence intervals are not (yet :-)).
With what precision do you want the results to print.
Determines the number of digits to use when displaying p values. P-values that are too small will be shown as p<.001 or p<.00001 etc.
Number of spaces between columns
Number of rows between table rows (note: one table row is 2 rows).
colNames can be "numbers" or "names". "Names" cause variables names to be printed in the heading; "numbers" causes the rows to become numbered and the numbers to be printed in the heading.
Additional arguments are ignored.
Gjalt-Jorn Peters
Maintainer: Gjalt-Jorn Peters gjalt-jorn@userfriendlyscience.com
rMatrix provides a symmetric or asymmetric matrix of correlations, their confidence intervals, and p-values. The p-values can be corrected for multiple testing.
rMatrix(mtcars, x=c('disp', 'hp', 'drat'))
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