bgc.sel.factor

<p>The cumulative effect of bgc and selection.  If bgc and sel are
population-scaled parameters describing biased gene conversion and selection,
then x should be sel+bgc for strong mutations, sel-bgc for weak mutations, a
and sel for neutral mutations.</p>

Provides an R interface to the 'PHAST'(<http://compgen.cshl.edu/phast/>) software
(Phylogenetic Analysis with Space/Time Models).  It can be used for
many types of analysis in comparative and evolutionary genomics,
such as estimating models of evolution from sequence data, scoring
alignments for conservation or acceleration, and predicting
elements based on conservation or custom phylogenetic hidden Markov
models.  It can also perform many basic operations on multiple
sequence alignments and phylogenetic trees.

Ritika Ramani

bgc.sel.factor: BGC+selection factor

Description

Usage

Arguments

Value