classify.muts.bgc

An alignment of type <code>msa</code>

align

An evolutionary model of type <code>tm</code>

A character vector giving the name(s) of the branch or branches we are interested in.

branch

Count the number of mutations of each gBGC type on each branch

Provides an R interface to the 'PHAST'(<http://compgen.cshl.edu/phast/>) software
(Phylogenetic Analysis with Space/Time Models). It can be used for
many types of analysis in comparative and evolutionary genomics,
such as estimating models of evolution from sequence data, scoring
alignments for conservation or acceleration, and predicting
elements based on conservation or custom phylogenetic hidden Markov
models. It can also perform many basic operations on multiple
sequence alignments and phylogenetic trees.

classify.muts.bgc: Count the number of mutations of each gBGC type on each branch

Description

Usage

Arguments

Value