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rphast (version 1.6.9)

composition.feat: Composition of features with respect to annotations

Description

Composition of features with respect to annotations

Usage

composition.feat(x, annotations)

Arguments

x

An object of type feat.

annotations

An object of type feat containing some annotations.

Value

A data frame with two columns and a row for each type of element in the annotations. The second column gives the fraction of x which fall in the corresponding annotation type. Given non-overlapping annotations which cover the entire range of interest, the second column should sum to 1 (otherwise not).