depth.tree

A vector of character strings, each containing a newick tree

tree

A vector of character strings, giving the node name to
use for each tree. Will be recycled to the length of the first argument.

node

Get the distance from a node to the root of a tree

Trees

Provides an R interface to the 'PHAST'(<http://compgen.cshl.edu/phast/>) software
(Phylogenetic Analysis with Space/Time Models). It can be used for
many types of analysis in comparative and evolutionary genomics,
such as estimating models of evolution from sequence data, scoring
alignments for conservation or acceleration, and predicting
elements based on conservation or custom phylogenetic hidden Markov
models. It can also perform many basic operations on multiple
sequence alignments and phylogenetic trees.

depth.tree: Get the distance from a node to the root of a tree

Description

Usage

Arguments

Value