flatten.feat

If TRUE, scores of merged features
are given by the average of those features, weighted by their
original lengths. Otherwise, scores of merged features are
simply summed.

weightedAverageScore

If TRUE, scores of merged features are given
by the minimum score of the combined features.

minScore

Combine adjacent features with the same "feature" field

Provides an R interface to the 'PHAST'(<http://compgen.cshl.edu/phast/>) software
(Phylogenetic Analysis with Space/Time Models). It can be used for
many types of analysis in comparative and evolutionary genomics,
such as estimating models of evolution from sequence data, scoring
alignments for conservation or acceleration, and predicting
elements based on conservation or custom phylogenetic hidden Markov
models. It can also perform many basic operations on multiple
sequence alignments and phylogenetic trees.

flatten.feat: Combine adjacent features with the same "feature" field

Description

Usage

Arguments

Value