rstanarm (version 2.18.2)

rstanarm-datasets: Datasets for rstanarm examples

Description

Small datasets for use in rstanarm examples and vignettes.

Format

bball1970

Data on hits and at-bats from the 1970 Major League Baseball season for 18 players.

Source: Efron and Morris (1975).

18 obs. of 5 variables

• Player Player's last name

• Hits Number of hits in the first 45 at-bats of the season

• AB Number of at-bats (45 for all players)

• RemainingAB Number of remaining at-bats (different for most players)

• RemainingHits Number of remaining hits

bball2006

Hits and at-bats for the entire 2006 American League season of Major League Baseball.

Source: Carpenter (2009)

302 obs. of 2 variables

• y Number of hits

• K Number of at-bats

kidiq

Data from a survey of adult American women and their children (a subsample from the National Longitudinal Survey of Youth).

Source: Gelman and Hill (2007)

434 obs. of 4 variables

• kid_score Child's IQ score

• mom_hs Indicator for whether the mother has a high school degree

• mom_iq Mother's IQ score

• mom_age Mother's age

mortality

Surgical mortality rates in 12 hospitals performing cardiac surgery in babies.

Source: Spiegelhalter et al. (1996).

12 obs. of 2 variables

• y Number of deaths

• K Number of surgeries

pbcLong,pbcSurv

Longitudinal biomarker and time-to-event survival data for 40 patients with primary biliary cirrhosis who participated in a randomised placebo controlled trial of D-penicillamine conducted at the Mayo Clinic between 1974 and 1984.

Source: Therneau and Grambsch (2000)

304 obs. of 8 variables (pbcLong) and 40 obs. of 7 variables (pbcSurv)

• age in years

• albumin serum albumin (g/dl)

• logBili logarithm of serum bilirubin

• death indicator of death at endpoint

• futimeYears time (in years) between baseline and the earliest of death, transplantion or censoring

• id numeric ID unique to each individual

• platelet platelet count

• sex gender (m = male, f = female)

• status status at endpoint (0 = censored, 1 = transplant, 2 = dead)

• trt binary treatment code (0 = placebo, 1 = D-penicillamine)

• year time (in years) of the longitudinal measurements, taken as time since baseline)

radon

Data on radon levels in houses in the state of Minnesota.

Source: Gelman and Hill (2007)

919 obs. of 4 variables

• log_radon Radon measurement from the house (log scale)

• log_uranium Uranium level in the county (log scale)

• floor Indicator for radon measurement made on the first floor of the house (0 = basement, 1 = first floor)

• county County name (factor)

roaches

Data on the efficacy of a pest management system at reducing the number of roaches in urban apartments.

Source: Gelman and Hill (2007)

262 obs. of 6 variables

• y Number of roaches caught

• roach1 Pretreatment number of roaches

• treatment Treatment indicator

• senior Indicator for only eldery residents in building

• exposure2 Number of days for which the roach traps were used

tumors

Tarone (1982) provides a data set of tumor incidence in historical control groups of rats; specifically endometrial stromal polyps in female lab rats of type F344.

Source: Gelman and Hill (2007)

71 obs. of 2 variables

• y Number of rats with tumors

• K Number of rats

wells

A survey of 3200 residents in a small area of Bangladesh suffering from arsenic contamination of groundwater. Respondents with elevated arsenic levels in their wells had been encouraged to switch their water source to a safe public or private well in the nearby area and the survey was conducted several years later to learn which of the affected residents had switched wells.

Souce: Gelman and Hill (2007)

3020 obs. of 5 variables

• switch Indicator for well-switching

• arsenic Arsenic level in respondent's well

• dist Distance (meters) from the respondent's house to the nearest well with safe drinking water.

• association Indicator for member(s) of household participate in community organizations

• educ Years of education (head of household)

References

Carpenter, B. (2009) Bayesian estimators for the beta-binomial model of batting ability. http://lingpipe-blog.com/2009/09/23/

Efron, B. and Morris, C. (1975) Data analysis using Stein's estimator and its generalizations. Journal of the American Statistical Association 70(350), 311--319.

Gelman, A. and Hill, J. (2007). Data Analysis Using Regression and Multilevel/Hierarchical Models. Cambridge University Press, Cambridge, UK. http://stat.columbia.edu/~gelman/arm/

Spiegelhalter, D., Thomas, A., Best, N., & Gilks, W. (1996) BUGS 0.5 Examples. MRC Biostatistics Unit, Institute of Public health, Cambridge, UK.

Tarone, R. E. (1982) The use of historical control information in testing for a trend in proportions. Biometrics 38(1):215--220.

Therneau, T. and Grambsch, P. (2000) Modeling Survival Data: Extending the Cox Model. Springer-Verlag, New York, US.

Examples

# NOT RUN {
# Using 'kidiq' dataset 
fit <- stan_lm(kid_score ~ mom_hs * mom_iq, data = kidiq, 
               prior = R2(location = 0.30, what = "mean"),
               # the next line is only to make the example go fast enough
               chains = 1, iter = 500, seed = 12345)
pp_check(fit, nreps = 20)
# }
# NOT RUN {
bayesplot::color_scheme_set("brightblue")
pp_check(fit, plotfun = "stat_grouped", stat = "median", 
         group = factor(kidiq$mom_hs, labels = c("No HS", "HS")))
# }
# NOT RUN {
# }