browserSession

browserSession-methods

browserSession,character-method

browserSession,BrowserView-method

browserSession,missing-method


  Methods for getting browser sessions.


methods

Extensible framework for interacting with multiple genome
browsers (currently UCSC built-in) and manipulating
annotation tracks in various formats (currently GFF, BED, bedGraph, BED15,
WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the
supported browsers, as well as query and modify the browser state, such as the
current viewport.

Michael Lawrence

rtracklayer

R interface to genome browsers and their annotation tracks

browserSession-methods function

The following methods are defined by <span class="pkg">rtracklayer</span>. <dl>
    <dt>object = "character"</dt><dd> <code>browserSession(object, ...)</code>: Creates a
      <code>BrowserSession</code> from a genome browser
      identifier. The identifier corresponds to the prefix of the
      session class name (e.g. "UCSC" in "UCSCSession"). The arguments
      in ... are passed to the initialization function of the class.</dd> <dt>object = "browserView"</dt><dd> Gets the
      <code>BrowserSession</code> for the view. </dd> <dt>object = "missing"</dt><dd> Calls <code>browserSession("ucsc", ...)</code>. </dd> </dl> 

Methods

 Get a genome browser session 

browserSession-methods: Get a genome browser session

Description

Arguments

Methods