cpneTrack


  A <code>GRanges</code> object (created by the <code>GGtools</code> package)
  with features from a subset of the SNPs on chromosome 20 from 60
  HapMap founders in the CEU cohort. Each SNP has an associated data
  value indicating its association with the expression of the CPNE1 gene
  according to a Cochran-Armitage 1df test. The top 5000 scoring SNPs
  were selected for the track.


datasets

Extensible framework for interacting with multiple genome
browsers (currently UCSC built-in) and manipulating
annotation tracks in various formats (currently GFF, BED, bedGraph, BED15,
WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the
supported browsers, as well as query and modify the browser state, such as the
current viewport.

Michael Lawrence

rtracklayer

R interface to genome browsers and their annotation tracks

cpneTrack function

Each feature (row) is a SNP. The association test scores are
  accessible via <code><a rd-options="BiocGenerics" href="/link/score?package=rtracklayer&version=1.32.1&to=BiocGenerics" data-mini-rdoc="BiocGenerics::score">score</a></code>.

Format

Vince Carey and the <code>GGtools</code> package.

Source

Each feature (row) is a SNP. The association test scores are
  accessible via <code><a rd-options='BiocGenerics' href='score'>score</a></code>.

cpneTrack: CPNE1 SNP track

Description

Usage

Arguments

Format

Source

Examples