trackNames

trackNames<-

trackNames<--methods

trackNames<-,UCSCTrackModes-method

trackNames<-,UCSCView-method

trackNames-methods

trackNames,UCSCSession-method

trackNames,UCSCTrackModes-method

trackNames,UCSCView-method


  Methods for getting and setting track names.


methods

tracks-methods

Extensible framework for interacting with multiple genome
browsers (currently UCSC built-in) and manipulating
annotation tracks in various formats (currently GFF, BED, bedGraph, BED15,
WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the
supported browsers, as well as query and modify the browser state, such as the
current viewport.

Michael Lawrence

rtracklayer

R interface to genome browsers and their annotation tracks

tracks-methods function

<dl>
 The following methods are defined by rtracklayer for getting
 track names via the generic <code>trackNames(object, ...)</code>. <dt>object = "UCSCSession"</dt><dd> Get the tracks loaded in the session. </dd> <dt>object = "UCSCTrackModes"</dt><dd> Get the visible tracks according to
 the modes (all tracks not set to "hide").</dd> <dt>object = "UCSCView"</dt><dd> Get the visible tracks in the view. </dd> The following methods are defined by rtracklayer for setting
 track names via the generic <code>trackNames(object) &lt;- value</code>. <dt>object = "UCSCTrackModes"</dt><dd> Sets the tracks that should be
 visible in the modes. All specified tracks with mode "hide" in
 <code>object</code> are set to mode "full". Any tracks in <code>object</code> that
 are not specified in the value are set to "hide". No other modes are
 changed.</dd> <dt>object = "UCSCView"</dt><dd> Sets the visible tracks in the view. This
 opens a new web browser with only the specified tracks visible. </dd> </dl>

Methods

 Accessing track names 

tracks-methods: Accessing track names

Description

Arguments

Methods