mydiag

Extract or replace the diagonal of a matrix, or construct a diagonal matrix (replace diag function from R-base)

models

The 'saemix' package implements the Stochastic Approximation EM algorithm for parameter estimation in (non)linear mixed effects models. The SAEM algorithm (i) computes the maximum likelihood estimator of the population parameters, without any approximation of the model (linearisation, quadrature approximation,...), using the Stochastic Approximation Expectation Maximization (SAEM) algorithm, (ii) provides standard errors for the maximum likelihood estimator (iii) estimates the conditional modes, the conditional means and the conditional standard deviations of the individual parameters, using the Hastings-Metropolis algorithm (see Comets et al. (2017) <doi:10.18637/jss.v080.i03>). Many applications of SAEM in agronomy, animal breeding and PKPD analysis have been published by members of the Monolix group. The full PDF documentation for the package including references about the algorithm and examples can be downloaded on the github of the IAME research institute for 'saemix': <https://github.com/iame-researchCenter/saemix/blob/7638e1b09ccb01cdff173068e01c266e906f76eb/docsaem.pdf>.

Emmanuelle Comets

saemix

Stochastic Approximation Expectation Maximization (SAEM)
Algorithm

Audrey Lavenu

Marc Lavielle

Belhal Karimi

Maud Delattre

Marilou Chanel

Johannes Ranke

Sofia Kaisaridi

Lucie Fayette

mydiag function

<dl><dt>x</dt>
<dd>a matrix, vector or 1D array, or missing.</dd>
<dt>nrow</dt>
<dd>Optional number of rows for the result when x is not a matrix.</dd>
<dt>ncol</dt>
<dd>Optional number of columns for the result when x is not a matrix.</dd></dl>

Arguments

Emmanuelle Comets <a href="/link/emmanuelle.comets%40inserm.fr?package=saemix&version=3.3" data-mini-rdoc="saemix::emmanuelle.comets@inserm.fr">emmanuelle.comets@inserm.fr</a>, Audrey Lavenu,
Marc Lavielle.

Author

Matrix diagonal — mydiag

<dl>

<dt>x</dt>
<dd>a matrix, vector or 1D array, or missing.</dd>


<dt>nrow</dt>
<dd>Optional number of rows for the result when x is not a matrix.</dd>


<dt>ncol</dt>
<dd>Optional number of columns for the result when x is not a matrix.</dd>

</dl>

Emmanuelle Comets <a href='mailto:emmanuelle.comets@inserm.fr'>emmanuelle.comets@inserm.fr</a>, Audrey Lavenu,
Marc Lavielle.

mydiag: Matrix diagonal

Description

Usage

Value

Arguments

Author

See Also

Examples