samplr (version 1.1.0)

calc_all: Diagnostics Wrapper

Description

Calculates all diagnostic functions in the samplr package for a given chain. Optionally, plots them.

Usage

calc_all(
  chain,
  plot = TRUE,
  max_freq = 0.1,
  filter_freq = TRUE,
  acf.alpha = 0.05,
  acf.lag.max = 100
)

Value

A list with all diagnostic calculations (a list of lists); and optionally a grid of plots.

Arguments

chain

Vector of n length, where n is the number of trials or sampler iterations

plot

Boolean. Whether to additionally plot the diagnostics.

max_freq, filter_freq

Additional parameters to calc_PSD.

acf.alpha, acf.lag.max

Additional parameters to calc_autocorr.

Examples

set.seed(1)
chain1 <- sampler_mh(1, "norm", c(0,1), diag(1))
diagnostics <- calc_all(chain1[[1]])
names(diagnostics)