scCustomize (version 3.0.0)

Cells.liger: Extract Cells from LIGER Object

Description

Extract all cell barcodes from LIGER object

Usage

# S3 method for liger
Cells(x, by_dataset = FALSE, ...)

Value

vector or list depending on by_dataset parameter

Arguments

x

LIGER object name.

by_dataset

logical, whether to return list with vector of cell barcodes for each dataset in LIGER object or to return single vector of cell barcodes across all datasets in object (default is FALSE; return vector of cells).

...

Arguments passed to other methods

Examples

if (FALSE) {
# return single vector of all cells
all_features <- Cells(x = object, by_dataset = FALSE)

# return list of vectors containing cells from each individual dataset in object
dataset_features <- Cells(x = object, by_dataset = TRUE)
}