scCustomize (version 3.0.0)

Create_10X_H5: Create H5 from 10X Outputs

Description

Creates HDF5 formatted output analogous to the outputs created by Cell Ranger and can be read into Seurat, LIGER, or SCE class object. Requires DropletUtils package from Bioconductor.

Usage

Create_10X_H5(
  raw_data_file_path,
  source_type = "10X",
  save_file_path,
  save_name
)

Value

A HDF5 format file that will be recognized as 10X Cell Ranger formatted file by Seurat or LIGER.

Arguments

raw_data_file_path

file path to raw data file(s).

source_type

type of source data (Default is "10X"). Alternatively can provide "Matrix" or "data.frame".

save_file_path

file path to directory to save file.

save_name

name prefix for output H5 file.

Examples

if (FALSE) {
Create_10X_H5(raw_data_file_path = "file_path", save_file_path = "file_path2", save_name = "NAME")
}