scCustomize (version 3.0.0)

DimPlot_All_Samples: DimPlot by Meta Data Column

Description

Creates DimPlot layout containing all samples within Seurat Object from orig.ident column

Usage

DimPlot_All_Samples(
  seurat_object,
  meta_data_column = "orig.ident",
  colors_use = "black",
  pt.size = NULL,
  aspect_ratio = NULL,
  title_size = 15,
  num_columns = NULL,
  reduction = NULL,
  dims = c(1, 2),
  raster = NULL,
  raster.dpi = c(512, 512),
  ...
)

Value

A ggplot object

Arguments

seurat_object

Seurat object name.

meta_data_column

Meta data column to split plots by.

colors_use

single color to use for all plots or a vector of colors equal to the number of plots.

pt.size

Adjust point size for plotting.

aspect_ratio

Control the aspect ratio (y:x axes ratio length). Must be numeric value; Default is NULL.

title_size

size for plot title labels.

num_columns

number of columns in final layout plot.

reduction

Dimensionality Reduction to use (if NULL then defaults to Object default).

dims

Which dimensions to plot. Defaults to c(1,2) if not specified.

raster

Convert points to raster format. Default is NULL which will rasterize by default if greater than 200,000 cells.

raster.dpi

Pixel resolution for rasterized plots, passed to geom_scattermore(). Default is c(512, 512).

...

Extra parameters passed to DimPlot.

Examples

library(Seurat)

pbmc_small$sample_id <- sample(c("sample1", "sample2"), size = ncol(pbmc_small), replace = TRUE)

DimPlot_All_Samples(seurat_object = pbmc_small, meta_data_column = "sample_id", color = "black",
num_columns = 2)