scCustomize (version 3.0.0)

Iterate_PC_Loading_Plots: Iterate PC Loading Plots

Description

Plot PC Heatmaps and Dim Loadings for exploratory analysis

Usage

Iterate_PC_Loading_Plots(
  seurat_object,
  dims_plot = NULL,
  file_path = NULL,
  name_prefix = NULL,
  file_name = "PC_Loading_Plots",
  return_plots = FALSE
)

Value

A list of plots outputted as pdf

Arguments

seurat_object

Seurat object name.

dims_plot

number of PCs to plot (integer). Default is all dims present in PCA.

file_path

directory file path to save file.

name_prefix

prefix for file name (optional).

file_name

suffix for file name. Default is "PC_Loading_Plots".

return_plots

Whether to return the plot list (Default is FALSE). Must assign to environment to save plot list.

See Also

PCHeatmap and VizDimLoadings

Examples

if (FALSE) {
Iterate_PC_Loading_Plots(seurat_object = seurat, dims_plot = 25, file_path = "plots/")
}