PC_Plotting

Plot PC Heatmaps and Dim Loadings for exploratory analysis. Plots a single Heatmap and Gene Loading Plot.
Used for PC_Loading_Plots function.

Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using 'R'. 'scCustomize' aims to provide 1) Customized visualizations for aid in ease of use and to create more aesthetic and functional visuals. 2) Improve speed/reproducibility of common tasks/pieces of code in scRNA-seq analysis with a single or group of functions. For citation please use: Marsh SE (2021) "Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing" <doi:10.5281/zenodo.5706430> RRID:SCR_024675.

Samuel Marsh

scCustomize

Custom Visualizations & Functions for Streamlined Analyses of
Single Cell Sequencing

Ming Tang

Velina Kozareva

Lucas Graybuck

PC_Plotting function

<dl><dt>seurat_object</dt>
<dd>Seurat Object.</dd>
<dt>dim_number</dt>
<dd>A single dim to plot (integer).</dd></dl>

Arguments

PC Plots — PC_Plotting

<dl>

<dt>seurat_object</dt>
<dd>Seurat Object.</dd>


<dt>dim_number</dt>
<dd>A single dim to plot (integer).</dd>

</dl>

PC_Plotting: PC Plots

Description

Usage

Value

Arguments

See Also

Examples