Top_Genes_Factor

Extract vector to the top loading genes for specified LIGER iNMF factor

Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using 'R'. 'scCustomize' aims to provide 1) Customized visualizations for aid in ease of use and to create more aesthetic and functional visuals. 2) Improve speed/reproducibility of common tasks/pieces of code in scRNA-seq analysis with a single or group of functions. For citation please use: Marsh SE (2021) "Custom Visualizations & Functions for Streamlined Analyses of Single Cell Sequencing" <doi:10.5281/zenodo.5706430> RRID:SCR_024675.

Samuel Marsh

scCustomize

Custom Visualizations & Functions for Streamlined Analyses of
Single Cell Sequencing

Ming Tang

Velina Kozareva

Lucas Graybuck

Top_Genes_Factor function

<dl><dt>liger_object</dt>
<dd>LIGER object name.</dd>
<dt>liger_factor</dt>
<dd>LIGER factor number to pull genes from.</dd>
<dt>num_genes</dt>
<dd>number of top loading genes to return as vector.</dd></dl>

Arguments

Extract top loading genes for LIGER factor — Top_Genes_Factor

<dl>

<dt>liger_object</dt>
<dd>LIGER object name.</dd>


<dt>liger_factor</dt>
<dd>LIGER factor number to pull genes from.</dd>


<dt>num_genes</dt>
<dd>number of top loading genes to return as vector.</dd>

</dl>

Top_Genes_Factor: Extract top loading genes for LIGER factor

Description

Usage

Value

Arguments

Examples