scCustomize (version 3.0.1)

Median_Stats: Median Statistics

Description

Get quick values for median Genes, UMIs, %mito per cell grouped by meta.data variable.

Usage

Median_Stats(
  seurat_object,
  group_by_var = "orig.ident",
  default_var = TRUE,
  median_var = NULL
)

Value

A data.frame.

Arguments

seurat_object

Seurat object name.

group_by_var

Column in meta.data slot to group results by (default = "orig.ident").

default_var

logical. Whether to include the default meta.data variables of: "nCount_RNA", "nFeature_RNA", "percent_mito", "percent_ribo", "percent_mito_ribo", and "log10GenesPerUMI" in addition to variables supplied to median_var.

median_var

Column(s) in @meta.data to calculate medians for in addition to defaults. Must be of class() integer or numeric.

Examples

if (FALSE) {
med_stats <- Median_Stats(seurat_object - obj, group_by_var = "orig.ident")
}