TransferAnnotations

This function assigns cluster-level annotations in a Seurat object based on the majority
annotation of cells within each cluster.

Reports markers list, differentially expressed genes, associated pathways, cell-type annotations, does batch correction and other related single cell analyses all wrapped within 'Seurat'.

Viswanadham Sridhara

scPipeline

A Wrapper for 'Seurat' and Related R Packages for End-to-End
Single Cell Analysis

TransferAnnotations function

<dl><dt>seurat_object</dt>
<dd>Seurat object containing cluster and annotation information.</dd>
<dt>annotation_col</dt>
<dd>The name of the metadata column with annotations (character string).</dd>
<dt>cluster_col</dt>
<dd>The name of the metadata column with cluster information (character string).</dd>
<dt>output_col</dt>
<dd>The name of the output column to store cluster annotations (character string).</dd></dl>

Arguments

Transfer annotations to Seurat clusters — TransferAnnotations

<dl>

<dt>seurat_object</dt>
<dd>Seurat object containing cluster and annotation information.</dd>


<dt>annotation_col</dt>
<dd>The name of the metadata column with annotations (character string).</dd>


<dt>cluster_col</dt>
<dd>The name of the metadata column with cluster information (character string).</dd>


<dt>output_col</dt>
<dd>The name of the output column to store cluster annotations (character string).</dd>

</dl>

TransferAnnotations: Transfer annotations to Seurat clusters

Description

Usage

Value

Arguments