Given an observed scan statistic \(\lambda^*\) and a vector of replicate scan statistics \(\lambda_i\), \(i=1,\ldots,R\), calculate the Monte Carlo \(p\)-value as $$ \frac{1 + \sum_{i=1}^R \mathrm{I}(\lambda_i > \lambda^*)}{1 + R} $$ The function is vectorized, so multiple \(p\)-values can be calculated if several scan statistics (e.g. statistics from secondary clusters) are supplied.
mc_pvalue(observed, replicates)A scalar containing the observed value of the scan statistic, or a vector of observed values from secondary clusters.
A vector of Monte Carlo replicates of the scan statistic.
The \(p\)-value or \(p\)-values corresponding to the observed scan statistic(s).