Stock assessment data and model fit for cod (Gadus morhua) in Icelandic waters, using a Coleraine statistical catch-at-age model.
This is a single-sex model with 10 age classes, the catch data starting in 1971 and ending in 2003. The model was fitted to three data components: survey abundance index, commercial catch at age, and survey catch at age.
x.codList of class scape containing:
N | predicted numbers at age |
B | predicted biomass, recruitment, and observed landings (year things) |
Sel | predicted selectivity and observed maturity (age things) |
Dev | predicted recruitment deviates from the stock-recruitment curve |
Survey | survey abundance index and fit |
CAc | commercial C@A (catch at age) and fit |
CAs | survey C@A and fit |
Hilborn et al. (2003) give a general description of the Coleraine generalized model. Magnusson and Hilborn (2007) describe the model used in this assessment.
A maturity vector of zeros and ones was used to predict the biomass of age 4 and older, the quantity of main interest for the management of this stock.
Estimated parameters: R0, Rinit, uinit, Sleft[commercial], Sfull[c], Sleft[survey], Sfull[s], q, and 41 recruitment deviates.
Hilborn, R., Maunder, M., Parma, A., Ernst, B., Payne, J., and Starr, P. (2003). Coleraine: A generalized age-structured stock assessment model. User's manual version 2.0. University of Washington Report SAFS-UW-0116.
Magnusson, A. and Hilborn, R. (2007). What makes fisheries data informative? Fish and Fisheries, 8, 337--358. tools:::Rd_expr_doi("10.1111/j.1467-2979.2007.00258.x")
importCol was used to import the fitted model.
x.cod, x.ling, x.oreo,
x.saithe, and x.sbw are fitted
scape models to explore.
xmcmc and xproj are MCMC results and
projections for the x.cod model run.
scape-package gives an overview of the package.
plotB(x.cod)
plotCA(x.cod, "c")
plotCA(x.cod, "s")
plotIndex(x.cod, "s")
plotN(x.cod)
plotSel(x.cod)
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