scater (version 1.0.4)

arrange: Arrange rows of pData(object) by variables.

Description

The SCESet returned will have cells ordered by the corresponding variable in pData(object).

Usage

arrange(object, ...)
"arrange"(object, ...)
arrange.SCESet(object, ...)

Arguments

object

A SCESet object.

...

Additional arguments to be passed to dplyr::arrange to act on pData(object).

Examples

data("sc_example_counts")
data("sc_example_cell_info")
pd <- new("AnnotatedDataFrame", data = sc_example_cell_info)
example_sceset <- newSCESet(countData = sc_example_counts, phenoData = pd)
example_sceset <- arrange(example_sceset, Cell_Cycle)