scater (version 1.0.4)

counts: Accessors for the 'counts' element of an SCESet object.

Description

The counts element holds the count data as a matrix of non-negative integer count values, one row for each feature (gene, exon, region, etc), and one column for each cell. It is an element of the assayData slot of the SCESet object.

Usage

"counts"(object)
"counts"(object)<-value
"counts"(object)
"counts"(object) <- value

Arguments

object

a SCESet object.

value

an integer matrix

Examples

data("sc_example_counts")
data("sc_example_cell_info")
example_sceset <- newSCESet(countData = sc_example_counts)
counts(example_sceset)