scater (version 1.0.4)

filter: Return SCESet with cells matching conditions.

Description

Subsets the columns (cells) of a SCESet based on matching conditions in the rows of pData(object).

Usage

filter(object, ...)
"filter"(object, ...)
filter.SCESet(object, ...)

Arguments

object

A SCESet object.

...

Additional arguments to be passed to dplyr::filter to act on pData(object).

Examples

data("sc_example_counts")
data("sc_example_cell_info")
pd <- new("AnnotatedDataFrame", data = sc_example_cell_info)
example_sceset <- newSCESet(countData = sc_example_counts, phenoData = pd)
example_sceset_treat1 <- filter(example_sceset, Treatment == "treat1")