scater (version 1.0.4)

fpkm: Accessors for the 'fpkm' (fragments per kilobase of exon per million reads mapped) element of an SCESet object.

Description

The fpkm element of the arrayData slot in an SCESet object holds a matrix containing fragments per kilobase of exon per million reads mapped (FPKM) values. It has the same dimensions as the 'exprs' and 'counts' elements, which hold the transformed expression data and count data, respectively.

Usage

fpkm(object)
fpkm(object) <- value
"fpkm"(object)
"fpkm"(object)<-value
"fpkm"(object)
"fpkm"(object) <- value

Arguments

object

a SCESet object.

value

a matrix of class "numeric"

Value

a matrix of FPKM values

Examples

data("sc_example_counts")
data("sc_example_cell_info")
example_sceset <- newSCESet(countData = sc_example_counts)
fpkm(example_sceset)