scater (version 1.0.4)

is_exprs: Accessors for the 'is_exprs' element of an SCESet object.

Description

The is_exprs element holds a logical matrix indicating whether or not each observation is above the defined lowerDetectionLimit in the SCESet object. It has the same dimensions as the 'exprs' and 'counts' elements, which hold the transformed expression data and count data, respectively.

Usage

is_exprs(object)
is_exprs(object) <- value
"is_exprs"(object)
"is_exprs"(object)<-value
"is_exprs"(object)
"is_exprs"(object) <- value

Arguments

object

a SCESet object.

value

an integer matrix

Value

a logical matrix indicating if observations are "expressed" or not

Examples

data("sc_example_counts")
data("sc_example_cell_info")
example_sceset <- newSCESet(countData = sc_example_counts)
is_exprs(example_sceset)