scater (version 1.0.4)

norm_counts: Accessors for the 'norm_counts' element of an SCESet object.

Description

The norm_counts element holds normalised count data as a matrix of non-negative values, one row for each feature (gene, exon, region, etc), and one column for each cell. It is an element of the assayData slot of the SCESet object.

Usage

norm_counts(object)
norm_counts(object) <- value
"norm_counts"(object)
"norm_counts"(object)<-value
"norm_counts"(object)
"norm_counts"(object) <- value

Arguments

object

a SCESet object.

value

an integer matrix

Value

a matrix of normalised count data

Examples

data("sc_example_counts")
data("sc_example_cell_info")
example_sceset <- newSCESet(countData = sc_example_counts)
norm_counts(example_sceset)