scater (version 1.0.4)

norm_cpm: Accessors for the 'norm_cpm' (normalised counts per million) element of an SCESet object.

Description

The norm_cpm element of the arrayData slot in an SCESet object holds a matrix containing normalised counts-per-million values. It has the same dimensions as the 'exprs' and 'counts' elements, which hold the transformed expression data and count data, respectively.

Usage

norm_cpm(object)
norm_cpm(object) <- value
"norm_cpm"(object)
"norm_cpm"(object)<-value
"norm_cpm"(object)
"norm_cpm"(object) <- value

Arguments

object

a SCESet object.

value

a matrix of class "numeric"

Value

a matrix of normalised counts-per-million data

Examples

data("sc_example_counts")
data("sc_example_cell_info")
example_sceset <- newSCESet(countData=sc_example_counts)
norm_cpm(example_sceset)