scater (version 1.0.4)

norm_fpkm: Accessors for the 'norm_fpkm' (normalised fragments per kilobase of exon per million reads mapped) element of an SCESet object.

Description

The norm_fpkm element of the arrayData slot in an SCESet object holds a matrix containing normalised fragments per kilobase of exon per million reads mapped (FPKM) values. It has the same dimensions as the 'exprs' and 'counts' elements, which hold the transformed expression data and count data, respectively.

Usage

norm_fpkm(object)
norm_fpkm(object) <- value
"norm_fpkm"(object)
"norm_fpkm"(object)<-value
"norm_fpkm"(object)
"norm_fpkm"(object) <- value

Arguments

object

a SCESet object.

value

a matrix of class "numeric"

Value

a matrix of normalised FPKM data

Examples

data("sc_example_counts")
data("sc_example_cell_info")
example_sceset <- newSCESet(countData = sc_example_counts)
norm_fpkm(example_sceset)