sccore (version 1.0.6)

fac2col: Utility function to translate a factor into colors

Description

Utility function to translate a factor into colors

Usage

fac2col(
  x,
  s = 1,
  v = 1,
  shuffle = FALSE,
  min.group.size = 1,
  return.details = FALSE,
  unclassified.cell.color = "gray50",
  level.colors = NULL
)

Value

vector or list of colors

Arguments

x

input factor

s

numeric The "saturation" to be used to complete the HSV color descriptions (default=1) See ?rainbow in Palettes, grDevices

v

numeric The "value" to be used to complete the HSV color descriptions (default=1) See ?rainbow in Palettes, grDevices

shuffle

boolean If TRUE, shuffles columns with shuffle(columns) (default=FALSE)

min.group.size

integer Exclude groups of size less than the min.group.size (default=1)

return.details

boolean If TRUE, returns a list list(colors=y, palette=col). Otherwise, just returns the factor (default=FALSE)

unclassified.cell.color

Color for unclassified cells (default='gray50')

level.colors

(default=NULL)

Examples

genes = factor(c("BRAF", "NPC1", "PAX3", "BRCA2", "FMR1"))
fac2col(genes)