mergeCountMatrices

Merge list of count matrices into a common matrix, entering 0s for the missing entries

Core utilities for single-cell RNA-seq data analysis. Contained within are utility functions for working with differential expression (DE) matrices and count matrices, a collection of functions for manipulating and plotting data via 'ggplot2', and functions to work with cell graphs and cell embeddings. Graph-based methods include embedding kNN cell graphs into a UMAP <doi:10.21105/joss.00861>, collapsing vertices of each cluster in the graph, and propagating graph labels.

Evan Biederstedt

sccore

Core Utilities for Single-Cell RNA-Seq

Viktor Petukhov

Rasmus Rydbirk

Peter Kharchenko

mergeCountMatrices function

<dl><dt>cms</dt>
<dd>List of count matrices</dd>
<dt>transposed</dt>
<dd>boolean Indicate whether 'cms' is transposed, e.g. cells in rows and genes in columns (default=FALSE)</dd>
<dt>...</dt>
<dd>Parameters for 'plapply' function</dd></dl>

Arguments

Merge list of count matrices into a common matrix, entering 0s for the missing entries — mergeCountMatrices

<dl>

<dt>cms</dt>
<dd>List of count matrices</dd>


<dt>transposed</dt>
<dd>boolean Indicate whether 'cms' is transposed, e.g. cells in rows and genes in columns (default=FALSE)</dd>


<dt>...</dt>
<dd>Parameters for 'plapply' function</dd>

</dl>

mergeCountMatrices: Merge list of count matrices into a common matrix, entering 0s for the missing entries

Description

Usage

Value

Arguments

Examples