propagateLabelsSolver

Propagate labels using Zhu, Ghahramani, Lafferty (2003) algorithm, "Semi-Supervised Learning Using Gaussian Fields and Harmonic Functions" &lt;http://mlg.eng.cam.ac.uk/zoubin/papers/zgl.pdf&gt;

Core utilities for single-cell RNA-seq data analysis. Contained within are utility functions for working with differential expression (DE) matrices and count matrices, a collection of functions for manipulating and plotting data via 'ggplot2', and functions to work with cell graphs and cell embeddings. Graph-based methods include embedding kNN cell graphs into a UMAP <doi:10.21105/joss.00861>, collapsing vertices of each cluster in the graph, and propagating graph labels.

Evan Biederstedt

sccore

Core Utilities for Single-Cell RNA-Seq

Viktor Petukhov

Rasmus Rydbirk

Peter Kharchenko

propagateLabelsSolver function

<dl><dt>graph</dt>
<dd>igraph graph object Graph input</dd>
<dt>labels</dt>
<dd>vector of factor or character labels, named by cell names</dd>
<dt>solver</dt>
<dd>Method of solver to use (default="mumps"), either "Matrix" or "mumps" (i.e. "rmumps::Rmumps")</dd></dl>

Arguments

Propagate labels using Zhu, Ghahramani, Lafferty (2003) algorithm, "Semi-Supervised Learning Using Gaussian Fields and Harmonic Functions" &lt;http://mlg.eng.cam.ac.uk/zoubin/papers/zgl.pdf&gt; — propagateLabelsSolver

<dl>

<dt>graph</dt>
<dd>igraph graph object Graph input</dd>


<dt>labels</dt>
<dd>vector of factor or character labels, named by cell names</dd>


<dt>solver</dt>
<dd>Method of solver to use (default="mumps"), either "Matrix" or "mumps" (i.e. "rmumps::Rmumps")</dd>

</dl>

Propagate labels using Zhu, Ghahramani, Lafferty (2003) algorithm, "Semi-Supervised Learning Using Gaussian Fields and Harmonic Functions" &lt;http://mlg.eng.cam.ac.uk/zoubin/papers/zgl.pdf&gt;

propagateLabelsSolver: Propagate labels using Zhu, Ghahramani, Lafferty (2003) algorithm, "Semi-Supervised Learning Using Gaussian Fields and Harmonic Functions" <http://mlg.eng.cam.ac.uk/zoubin/papers/zgl.pdf>

Description

Usage

Value

Arguments

Examples