umapEmbedding

datasets

Core utilities for single-cell RNA-seq data analysis. Contained within are utility functions for working with differential expression (DE) matrices and count matrices, a collection of functions for manipulating and plotting data via 'ggplot2', and functions to work with cell graphs and cell embeddings. Graph-based methods include embedding kNN cell graphs into a UMAP <doi:10.21105/joss.00861>, collapsing vertices of each cluster in the graph, and propagating graph labels.

Evan Biederstedt

sccore

Core Utilities for Single-Cell RNA-Seq

Viktor Petukhov

Rasmus Rydbirk

Peter Kharchenko

umapEmbedding function

<p>An object of class <code>matrix</code> (inherits from <code>array</code>) with 12000 rows and 2 columns.</p>

Format

UMAP embedding — umapEmbedding

UMAP embedding

umapEmbedding: UMAP embedding

Description

Usage

Arguments

Format