The Sequential Coalescent with Recombination Model (SCRM) is an approximation of the Ancestral Recombination Graph. It can be used to simulate the neutral evolution of chromosomes/biological sequences subject to possibly complicated population structure. The program scrm is an implementation of this model that is designed to act as an drop-in replacement for the widely adopted coalescent simulator ms. This package contains scrm along with an R interface.
Paul Staab, Zhu Sha, Dirk Metzler & Gerton Lunter
Maintainer: Paul Staab develop@paulstaab.de
scrm for details on how to use scrm,
vignette('scrm-Arguments') for an overview of command line arguments and
vignette('scrm-TreesForApe') for an example on using
genealogies simulated with scrm with package 'ape'.