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sdm (version 1.2-32)

Species Distribution Modelling

Description

An extensible framework for developing species distribution models using individual and community-based approaches, generate ensembles of models, evaluate the models, and predict species potential distributions in space and time. For more information, please check the following paper: Naimi, B., Araujo, M.B. (2016) .

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Version

Install

install.packages('sdm')

Monthly Downloads

1,203

Version

1.2-32

License

GPL (>= 3)

Maintainer

Babak Naimi

Last Published

March 2nd, 2024

Functions in sdm (1.2-32)

niche

Generate and plot Ecological Niche
evaluates

evaluate for accuracy
installAll

install all packages that may be required by the package
names

Names of species
pca

Principle Component Analysis
get models' outputs

Get information/modelIDs relevant to fitted models in a sdmModels object
featuresFrame-class

featureFrame class
gui

Graphical User Interface
nicheSimilarity

Niche Similarity
Extract by index

Indexing to extract records of a sdmdata object
predict

sdm model prediction
sdmCorrelativeMethod-class

sdmCorrelativeMethod class
getVarImp

variable importance
sdmModels-classes

sdmModels classes
subset

Subset models in a sdmModels object
read.sdm

read/write sdm* object from/to a file
sdmData

creating sdm Data object
sdm

Fit and evaluate species distribution models
rcurve

Generate and plot response curves
sdmSetting

creating sdmSetting object
sdmdata-class

An S4 class representing sdm dataset
roc

plot ROC curves
Arith-methods

Combine (merge) two sdmModels into a single object
density

density
add

add a new method to the package
as.data.frame

Get a data.frame with record id values (rID)
calibration

Calibration
background

Generate background (pseudo-absence) records
ensemble

Ensemble Forecasting of SDMs
coords

get or set spatial coordinates of species data
boxplot

boxplot
sdmAdapt

Adapting sdm* objects in the new version