sensitivityPStrat (version 1.0-6)

plot.sensitivity: plots the results of calls to the sensitivity functions.

Description

Functions used to plot the objects created by the sensitivityPStrat family of functions.

Usage

"plot"(x, xlim, ylim, xlab = expression(beta), ylab = "ACE", display = c("analytic", "bootstrap"), ci.select = 1, col = "black", line.col = col, point.col = col, analytic.col = "red", analytic.line.col = analytic.col, analytic.point.col = analytic.col, bootstrap.col = "green", bootstrap.line.col = bootstrap.col, bootstrap.point.col = bootstrap.col, panel.last = NULL, type = "l", ...)
"plot"(x, xlim, ylim, xlab = expression(beta[0]), ylab = expression(beta[1]), display = c("analytic", "bootstrap"), col = c(gray(.9), gray(1), gray(.8)), panel.last = NULL, ...)
"plot"(x, xlim, ylim, xlab = expression(beta), ylab = "SCE", t.point, display = c("analytic", "bootstrap"), col = "black", line.col = col, point.col = col, analytic.col = "red", analytic.line.col = analytic.col, analytic.point.col = analytic.col, bootstrap.col = "green", bootstrap.line.col = bootstrap.col, bootstrap.point.col = bootstrap.col, panel.last = NULL, type = "l", ...)

Arguments

x

sensitivity object

t.point

the time point at which data to create the plot.

display

character vector. Controls which confidence interval to use plot.

ci.select

integer vector or all. Selects the confidence interval to be ploted. If set to all then all confidence intervals are plotted. Default value is 1.

line.col

the color all the lines should be.

point.col

the color all the infinity points should be.

analytic.col

vector; the color of all of the analytic confidence interval markings. Value are recycled if more confidence intervals are selected then given color values.

analytic.line.col

vector;the color of all of the analytic confidence interval lines. Value are recycled if more confidence intervals are selected then given color values.

analytic.point.col

vector; the color of all of the analytic confidence interval infinity points. Value are recycled if more confidence intervals are selected then given color values.

bootstrap.col

vector; the color of all of the bootstrap confidence interval markings. Value are recycled if more confidence intervals are selected then given color values.

bootstrap.line.col

vector; the color of all of the bootstrap confidence interval lines. Value are recycled if more confidence intervals are selected then given color values.

bootstrap.point.col

vector; the color of all of the bootstrap confidence interval infinity points. Value are recycled if more confidence intervals are selected then given color values.

xlim, ylim, xlab, ylab, col, panel.last, type

see plot.default

...

arguments passed to plot.default

See Also

plot.default

Examples

data(vaccine.trial)

ansJR<-with(vaccine.trial,
          sensitivityJR(z=treatment,s=hiv.outcome,y=logVL,
                    beta0=c(-1,-.5,-.25,0,.25,.5,1),
                    beta1=c(-1,-.5,-.25,0,.25,.5,1),
                    phi=c(0.95,0.90), selection="infected",
                    groupings=c("placebo","vaccine"),
                    N.boot=50)
         )

plot(ansJR)

ans<-with(vaccine.trial,
          sensitivityGBH(z=treatment,s=hiv.outcome,y=logVL,
                    beta=c(-Inf,-1,0.75,-0.5,-0.25,0,.25,.5,.75,1,Inf),
                    selection="infected",
                    groupings=c("placebo","vaccine"),
                    empty.principal.stratum=c("not infected","infected"),
                    ci.method="bootstrap", ci=c(0.95, 0.9, 0.9),
                    ci.type=c("twoSided", "upper", "lower"),
                    custom.FUN=function(mu0, mu1, ...) mu1 - mu0,
                    N.boot=50, method=c("ACE", "T1", "T2"),
                    upperTest=TRUE, lowerTest=TRUE, twoSidedTest=TRUE)
         )

plot(ans, ci.select="all", bootstrap.col=c("red","green","blue"))