seqCBS-package

seqCBS

<p>CNV detection using matched case-control sequencing read data. It gives a number of scan statistics for the detection of rate differences between two non-homogeneous Poisson Processes, and modified BIC model selection.</p>

 package

This is a method for DNA Copy Number Profiling using
Next-Generation Sequencing. It has new model and test
statistics based on non-homogeneous Poisson Processes with
change point models. It uses an adaptation of Circular Binary
Segmentation. Also included are methods for point-wise Bayesian
Confidence Interval and model selection method for the
change-point model. A case and a control sample reads (normal
and tumor) are required.

Package:	seqCBS
Type:	Package
Version:	1.2
Date:	2011-05-18
License:	GPL-2
LazyLoad:	yes

seqCBS-package: Scan Statistics CNV detection using sequencing data

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